Initial inclusion of tests #10
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I added some initial tests for verifying the outputs of the db build script. A few issues were identified however, we need to pin the blast version a user can use as outputs between blast versions seem to vary quite a bit, the test output data was updated to meet blast+ version 2.15.0 and the readme's compatibility section was updated. One test currently fails as well, as there is a lack of continuity between outputs in the results.json and the config.json particularly the date fields. It would be nice to make the keys between these two files match in the future as well.
I have added initial tests for the format module verifying outputs, it appeared that the outputs that were passed as examples to the pipeline differed from those generated. It seemed some column headers were mangled and there may have been differences in fields generated. I have updated the test data to reflect the more recent version of locidex
I have added initial tests for the format module verifying outputs, it appeared that the outputs that were passed as examples to the pipeline differed from those generated. It seemed some column headers were mangled and there may have been differences in fields generated. I have updated the test data to reflect the more recent version of locidex
…ion inconsistency
…ion inconsistency
…ion inconsistency
Added tests for format module
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This is the first PR contributing tests to Locidex. The tests will require refactoring as time goes to unify style, syntax and organization of test code.
Some potential changes for future iteration on the tests include:
conftest.pyto organize constants and fixtures in one place