Code

Initial inclusion of tests#10

Code

Merged

mattheww95 merged 45 commits intodevphac-nml/locidex:devfrom testsphac-nml/locidex:testsCopy head branch name to clipboardApr 25, 2024

Commits

Commits on Apr 4, 2024

• added tests folder

  mattheww95

  committed
  343fd24

  Copy full SHA for 343fd24

• Added test for build script

  Show description for 8f50545
  mattheww95

  committed
  8f50545

  Copy full SHA for 8f50545

• Added tests for format module

  Show description for 9a36c22
  mattheww95

  committed
  9a36c22

  Copy full SHA for 9a36c22

• Added tests for format module

  Show description for aa96310
  mattheww95

  committed
  aa96310

  Copy full SHA for aa96310

Commits on Apr 9, 2024

• added GitAction CI test

  kbessonov1984

  committed
  c6bbb6d

  Copy full SHA for c6bbb6d

• requirements.txt file added for install ease and CI workflow

  kbessonov1984

  committed
  448550a

  Copy full SHA for 448550a

• updated locidex pytest workflow with blast and mafft dependencies

  kbessonov1984

  committed
  c95f9d0

  Copy full SHA for c95f9d0

• updated locidex pytest workflow with blast and mafft dependencies

  kbessonov1984

  committed
  6ec957c

  Copy full SHA for 6ec957c

• updated locidex pytest workflow with blast and mafft dependencies

  kbessonov1984

  committed
  6584731

  Copy full SHA for 6584731

• updated locidex pytest workflow with blast and mafft dependencies

  kbessonov1984

  committed
  5a39fbf

  Copy full SHA for 5a39fbf

• updated locidex pytest workflow with blast and mafft dependencies

  kbessonov1984

  committed
  e3a4759

  Copy full SHA for e3a4759

• fixed test_build.py and skipped test_file_outputs() due to BLAST version inconsistency

  kbessonov1984

  committed
  1458802

  Copy full SHA for 1458802

• fixed test_build.py and skipped test_file_outputs() due to BLAST version inconsistency

  kbessonov1984

  committed
  76991fc

  Copy full SHA for 76991fc

• fixed test_build.py and skipped test_file_outputs() due to BLAST version inconsistency

  kbessonov1984

  committed
  975abf6

  Copy full SHA for 975abf6

• Added assignemnt and db class tests. Fixed class typo.

  ameknas-projects

  committed
  9ac398e

  Copy full SHA for 9ac398e

Commits on Apr 10, 2024

• fixed assignment class unique values list initialization error on line 14

  kbessonov1984

  committed
  b92f35c

  Copy full SHA for b92f35c

• blast class tests are in

  kbessonov1984

  committed
  1876f03

  Copy full SHA for 1876f03

• added tests for parse_blast class that parses blast output

  kbessonov1984

  committed
  de4a217

  Copy full SHA for de4a217

Commits on Apr 12, 2024

• tests for extractor class

  ameknas-phac

  committed
  49d5146

  Copy full SHA for 49d5146

• Added tests for parse_fasta class

  ameknas-phac

  committed
  b59faad

  Copy full SHA for b59faad

Commits on Apr 15, 2024

• Added tests for mafft class

  ameknas-phac

  committed
  cc221f4

  Copy full SHA for cc221f4

• extractor.py class is fully tested

  kbessonov1984

  committed
  8367063

  Copy full SHA for 8367063

Commits on Apr 16, 2024

• Added tests for metadata classes. Class restructure needed.

  ameknas-phac

  committed
  681994f

  Copy full SHA for 681994f

Commits on Apr 17, 2024

• aligner class tests complete coverage

  kbessonov1984

  committed
  9cd343a

  Copy full SHA for 9cd343a

• Merge branch 'tests' of github.com:phac-nml/locidex into tests

  kbessonov1984

  committed
  3419b6b

  Copy full SHA for 3419b6b

• aligner class tests complete coverage

  kbessonov1984

  committed
  97f594a

  Copy full SHA for 97f594a

Commits on Apr 18, 2024

• Added tests for prodigal.py gene prediction class

  ameknas-phac

  committed
  bba1aa9

  Copy full SHA for bba1aa9

Commits on Apr 23, 2024

• Merge pull request #7 from phac-nml/test/format

  Show description for 4e38102
  mattheww95

  authored
  4e38102

  Copy full SHA for 4e38102

• investigating test failure

  mattheww95

  committed
  207b2d3

  Copy full SHA for 207b2d3

• updated test format to sort input

  mattheww95

  committed
  67e8cfe

  Copy full SHA for 67e8cfe

• updated test format input comparisons

  mattheww95

  committed
  a45f9cc

  Copy full SHA for a45f9cc

• updated tests sort key

  mattheww95

  committed
  349265a

  Copy full SHA for 349265a

• updated tests sort key

  mattheww95

  committed
  fa3bebe

  Copy full SHA for fa3bebe

• added protein blast dbs

  mattheww95

  committed
  316d536

  Copy full SHA for 316d536

• Added tests for parse_gbk class

  ameknas-phac

  committed
  bc4eeb0

  Copy full SHA for bc4eeb0

• seq_intake.py initial commit

  kbessonov1984

  committed
  37151cf

  Copy full SHA for 37151cf

• seq_intake.py initial commit

  kbessonov1984

  committed
  08113c9

  Copy full SHA for 08113c9

• seq_intake.py initial commit

  kbessonov1984

  committed
  f0673b8

  Copy full SHA for f0673b8

• seq_intake.py initial commit

  kbessonov1984

  committed
  1e0f285

  Copy full SHA for 1e0f285

• seq_intake.py initial commit

  kbessonov1984

  committed
  785cd1a

  Copy full SHA for 785cd1a

• seq_intake.py initial commit

  kbessonov1984

  committed
  53bdd5c

  Copy full SHA for 53bdd5c

• seq_intake.py initial commit

  kbessonov1984

  committed
  1b2d764

  Copy full SHA for 1b2d764

Commits on Apr 25, 2024

• seq_intake.py final commit

  kbessonov1984

  committed
  b5c0b00

  Copy full SHA for b5c0b00

• seq_intake.py final commit

  kbessonov1984

  committed
  faec18d

  Copy full SHA for faec18d

• seq_intake.py final commit

  kbessonov1984

  committed
  d56b0b2

  Copy full SHA for d56b0b2