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Merge v1.0.0 release #2080

Merged
merged 69 commits into from
Mar 3, 2025
Merged

Merge v1.0.0 release #2080

merged 69 commits into from
Mar 3, 2025

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mikkonie
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@mikkonie mikkonie commented Mar 3, 2025

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@mikkonie
upgrade to django-sodar-core v1.0.2 (#1922)
0ba5698
@mikkonie
fix E721 errors in linting (#1978)
60579c6
@mikkonie
update rest api versioning (#1936)
71adb59
@mikkonie
add rest api pagination (#1994)
b7aa36e
@mikkonie
update api views for openapi support (#1951)
e65ab54
@mikkonie
upgrade dependencies (#1959), update docs (#1991)
6228314
@mikkonie
remove rebase residue
543b00d
@mikkonie
update delete request email sending for all user addresses (#2000)
237d7da
@mikkonie
add email opt-out settings (#1916, #1939)
4486e60
@mikkonie
refactor tests (#1991, #2001, #2002)
3ee4e53
@mikkonie
update taskflow user name parameter naming (#1653)
99252d2
@mikkonie
update dockerfile for v1.0 upgrades (#2003)
72216df
@mikkonie
remove gbdm depdendency from dockerfile (#2003)
74314c6
@mikkonie
fix whtenoise issues in docker building (#2004)
32fce83
@mikkonie
upgrade to irods v4.3.3 in ci (#1815)
9779951
@mikkonie
upgrade to python-irodsclient v2.1.0 (#2007)
34c3f54
@mikkonie
fix SheetDeleteView timeline status updating (#1798), refactor tests
3100222
@mikkonie
update timeline event status constants (#2010)
56dfd4b
@mikkonie
update ontology term modal select input displaying (#1974)
9f87f1c
@mikkonie
add assay plugin tests, fix and refactor (#1980, #2014, #2017)
fb21ffb
@mikkonie
refactor get_assay_path() (#2016)
d9fa11f
@mikkonie
add session control to django settings (#2015)
3176882
@mikkonie
refactor landing_zone_move flow (#1846)
3a52413
@mikkonie
add study plugin override (#1885)
93a13e9
@mikkonie
add irods/igv token auth support (#1999, #2021)
1a453a1
@mikkonie
update python-irodsclient redirect issue note (#2022)
bd30196
@mikkonie
fix TestIrodsAccessTicketCreateView test failures (#2026)
54857e7
@mikkonie
upgrade to python-irodsclient v2.2.0 (#1959, #2023)
e779c93
@mikkonie
add ldap/oidc auth setting links in docs (#1988)
6770150
@mikkonie
update rest api views to return 503 with locked project (#1847)
b0743af
@mikkonie
remove irods <4.3 acl compatibility helpers (#2009)
c28420c
@mikkonie
fix BatchValidateChecksumsTask file opening handling (#2049)
5591c20
@mikkonie
update BatchValidateChecksumsTask error display on empty md5 value (#…
d0affc2 
…2050)
@mikkonie
fix get_object_link() for finished landing zones (#2005)
64c7cf5
@mikkonie
upgrade vue app dependencies (#1959)
279eba6
@mikkonie
upgrade to altamisa v0.3, update list value support (#1789, #2033)
08c516c
@mikkonie
upgrade irods version in ci (#1815)
67e05dc
@mikkonie
fix accept_request() timeline event status (#2027)
8a7dd00
@mikkonie
upgrade to django-sodar-core v1.0.4 (#1959)
6a8b1a6
@mikkonie
squash migrations (#1967)
b3571eb
@mikkonie
fix IrodsDataRequest accept issues (#2058, #2060, #2061)
26a9c57
@mikkonie
fix irods file list modal overflow (#2056)
d14e16e
@mikkonie
update rest api user fields (#2057)
04c9288
@mikkonie
update docs (#2053, #2055)
606d1a1
@mikkonie
add md5 file utf-8 bom header support (#1818)
e1365fb
@mikkonie
upgrade coveralls in ci (#2069)
bac23f7
@mikkonie
upgrade to django-sodar-core v1.0.5 (#1959)
5a6584e
@mikkonie
fix ZoneCreateView access with no irods colls (#2066)
b741688
@mikkonie
fix sheet restore timeline event status updating (#2070)
dba0077
@mikkonie
fix study app igv session file url routes (#2074)
679f760
@mikkonie
update irodsinfo manual link (#2073)
cd010e7
@mikkonie
fix sheet editor numeric column detection (#2071)
49b605c
@mikkonie
upgrade to irods v4.3.3-2 in ci (#2063)
46df43c
@mikkonie
update create_irods_user() app alert for oidc users (#2077)
4b35eac
@mikkonie
add SampleDataFileExistsAPIView access restricting (#2078)
e61942d
@mikkonie
upgrade production dependencies (#1959)
7fa962e
@mikkonie
cleanup and prepare v1.0.0 release (#1991)
691fce8
@mikkonie mikkonie added this to the v1.0.0 milestone Mar 3, 2025
@mikkonie mikkonie self-assigned this Mar 3, 2025
@mikkonie mikkonie merged commit 87d975c into main Mar 3, 2025
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